Represents MAGE Class NameValueType
A tuple designed to store data, keyed by a name and type.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute NameValueType.name
The name of the key.
MAGE attribute NameValueType.value
The value of the name.
MAGE attribute NameValueType.type
The type of the key.
Represents 1..n association between NameValueType and NameValueType
Allows nested specification of name/value pairs
WID of the object this NameValueType describes
Represents MAGE Class Contact
A contact is either a person or an organization.
Includes MAGE Class Organization
Includes MAGE Class Person
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Discriminator column specifies type of object this row represents
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
MAGE attribute Contact.URI
MAGE attribute Contact.address
MAGE attribute Contact.phone
MAGE attribute Contact.tollFreePhone
MAGE attribute Contact.email
MAGE attribute Contact.fax
Represents n..1 association between Organization and Organization
The containing organization (the university or business which a lab belongs to, etc.)
MAGE attribute Person.lastName
MAGE attribute Person.firstName
MAGE attribute Person.midInitials
Represents n..1 association between Person and Organization
The organization a person belongs to.
Represents MAGE Class ArrayDesign
Describes the design of an gene expression layout. In some cases this might be virtual and, for instance, represent the output from analysis software at the composite level without reporters or features.
Includes MAGE Class PhysicalArrayDesign
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Discriminator column specifies type of object this row represents
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
MAGE attribute ArrayDesign.version
The version of this design.
MAGE attribute ArrayDesign.numberOfFeatures
The number of features for this array
Represents 1..1 association between PhysicalArrayDesign and OntologyEntry
The type of surface from a controlled vocabulary that would include terms such as non-absorptive, absorptive, etc.
Represents MAGE Class DesignElementGroup
The DesignElementGroup holds information on either features, reporters, or compositeSequences, particularly that information that is common between all of the DesignElements contained.
Includes MAGE Class CompositeGroup
Includes MAGE Class FeatureGroup
Includes MAGE Class ReporterGroup
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Discriminator column specifies type of object this row represents
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
Represents 1..n association between ArrayDesign and FeatureGroup
The grouping of like Features together. Typically for a physical array design, this will be a single grouping of features whose type might be PCR Product or Oligo. If more than one technology type occurs on the array, such as the mixing of Cloned BioMaterial and Oligos, then there would be multiple FeatureGroups to segregate the technology types.
Represents 1..1 association between DesignElementGroup and OntologyEntry
The organism from which the biosequences of this group are from.
MAGE attribute FeatureGroup.featureWidth
The width of the feature.
MAGE attribute FeatureGroup.featureLength
The length of the feature.
MAGE attribute FeatureGroup.featureHeight
The height of the feature.
Represents 1..1 association between FeatureGroup and OntologyEntry
The technology type of this design. By specifying a technology type, higher level analysis can use appropriate algorithms to compare the results from multiple arrays. The technology type may be spotted cDNA or in situ photolithography.
Represents 1..1 association between FeatureGroup and OntologyEntry
The expected shape of the feature on the array: circular, oval, square, etc.
Represents 1..1 association between FeatureGroup and DistanceUnit
The unit for the feature measures.
Represents MAGE Class Zone
Specifies the location of a zone on an array.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
MAGE attribute Zone.row
row position in the ZoneGroup
MAGE attribute Zone.column
column position in the ZoneGroup.
MAGE attribute Zone.upperLeftX
Boundary vertical upper left position relative to (0,0).
MAGE attribute Zone.upperLeftY
Boundary horizontal upper left position relative to (0,0).
MAGE attribute Zone.lowerRightX
Boundary vertical lower right position relative to (0,0).
MAGE attribute Zone.lowerRightY
Boundary horizontal lower right position relative to (0,0).
Represents 1..1 association between Zone and DistanceUnit
Unit for the Zone attributes.
Represents 1..n association between ZoneGroup and Zone
Describes the location of different zones within the array design.
Represents MAGE Class ZoneGroup
Specifies a repeating area on an array. This is useful for printing when the same pattern is repeated in a regular fashion.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents 1..n association between PhysicalArrayDesign and ZoneGroup
In the case where the array design is specified by one or more zones, allows specifying where those zones are located.
MAGE attribute ZoneGroup.spacingsBetweenZonesX
Spacing between zones, if applicable.
MAGE attribute ZoneGroup.spacingsBetweenZonesY
Spacing between zones, if applicable.
MAGE attribute ZoneGroup.zonesPerX
The number of zones on the x-axis.
MAGE attribute ZoneGroup.zonesPerY
The number of zones on the y-axis.
Represents 1..1 association between ZoneGroup and DistanceUnit
Unit for the ZoneGroup attributes.
Represents 1..1 association between ZoneGroup and ZoneLayout
Describes the rectangular layout of features in the array design.
Represents MAGE Class ZoneLayout
Specifies the layout of features in a rectangular grid.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute ZoneLayout.numFeaturesPerRow
The number of features from left to right.
MAGE attribute ZoneLayout.numFeaturesPerCol
The number of features from top to bottom of the grid.
MAGE attribute ZoneLayout.spacingBetweenRows
Spacing between the rows.
MAGE attribute ZoneLayout.spacingBetweenCols
Spacing between the columns.
Represents 1..1 association between ZoneLayout and DistanceUnit
Unit of the ZoneLayout attributes.
Represents MAGE Class ExperimentDesign
The ExperimentDesign is the description and collection of ExperimentalFactors and the hierarchy of BioAssays to which they pertain.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents 1..n association between Experiment and ExperimentDesign
The association to the description and annotation of the Experiment, along with the grouping of the top-level BioAssays.
Represents 1..1 association between ExperimentDesign and Description
Description of the quality control aspects of the Experiment.
Represents 1..1 association between ExperimentDesign and Description
Description of the normalization strategy of the Experiment.
Represents 1..1 association between ExperimentDesign and Description
Description of the replicate strategy of the Experiment.
Represents MAGE Class ExperimentalFactor
ExperimentFactors are the dependent variables of an experiment (e.g. time, glucose concentration, ...).
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
Represents 1..n association between ExperimentDesign and ExperimentalFactor
The description of the factors (TimeCourse, Dosage, etc.) that group the BioAssays.
Represents 1..1 association between ExperimentalFactor and OntologyEntry
The category of an ExperimentalFactor could be biological (time, [glucose]) or a methodological factor (differing cDNA preparation protocols).
Represents MAGE Class FactorValue
The value for a ExperimentalFactor
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
Represents 1..n association between ExperimentalFactor and FactorValue
The pairing of BioAssay FactorValues with the ExperimentDesign ExperimentFactor.
Represents n..1 association between FactorValue and ExperimentalFactor
The pairing of BioAssay FactorValues with the ExperimentDesign ExperimentFactor.
Represents 1..1 association between FactorValue and Measurement
The measured value for this factor.
Represents 1..1 association between FactorValue and OntologyEntry
Allows a more complex value to be specified for a FactorValue than a simple Measurement.
Represents MAGE Class QuantitationType
A method for calculating a single datum of the matrix (e.g. raw intensity, background, error).
Includes MAGE Class SpecializedQuantitationType
Includes MAGE Class StandardQuantitationType
Includes MAGE Class ConfidenceIndicator
Includes MAGE Class DerivedSignal
Includes MAGE Class Error
Includes MAGE Class ExpectedValue
Includes MAGE Class Failed
Includes MAGE Class MeasuredSignal
Includes MAGE Class PValue
Includes MAGE Class PresentAbsent
Includes MAGE Class Ratio
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Discriminator column specifies type of object this row represents
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
MAGE attribute QuantitationType.isBackground
Indicates whether the quantitation has been measured from the background or from the feature itself.
Represents n..1 association between QuantitationType and Channel
The optional channel associated with the QuantitationType.
Represents 1..1 association between QuantitationType and OntologyEntry
Indication of how to interpret the value. From a suggested vocabulary of {LINEAR | LN | LOG2 |LOG10 | FOLD_CHANGE | OTHER}
Represents 1..1 association between QuantitationType and OntologyEntry
The specific type for the quantitations. From a controlled vocabulary of {float, int, boolean, etc.}
Represents n..1 association between ConfidenceIndicator and QuantitationType
The association between a ConfidenceIndicator and the QuantitationType its is an indicator for.
Represents MAGE Class Database
An address to a repository.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
MAGE attribute Database.version
The version for which a DatabaseReference applies.
MAGE attribute Database.URI
The location of the Database.
Represents MAGE Class Array
The physical substrate along with its features and their annotation
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
MAGE attribute Array.arrayIdentifier
An identifying string, e.g. a barcode.
MAGE attribute Array.arrayXOrigin
This can indicate the x position on a slide, chip, etc. of the first Feature and is usually specified relative to the fiducial.
MAGE attribute Array.arrayYOrigin
This can indicate the y position on a slide, chip, etc. of the first Feature and is usually specified relative to the fiducial.
MAGE attribute Array.originRelativeTo
What the array origin is relative to, e.g. upper left corner, fiducial, etc.
Represents n..1 association between Array and ArrayDesign
The association of a physical array with its array design.
Represents n..1 association between Array and ArrayManufacture
Association between the manufactured array and the information on that manufacture.
Represents n..1 association between Array and ArrayGroup
Association between an ArrayGroup and its Arrays, typically the ArrayGroup will represent a slide and the Arrays will be the manufactured so that they may be hybridized separately on that slide.
Represents MAGE Class ArrayGroup
An array package is a physical platform that contains one or more arrays that are separately addressable (e.g. several arrays that can be hybridized on a single microscope slide) or a virtual grouping together of arrays. The array package that has been manufactured has information about where certain artifacts about the array are located for scanning and feature extraction purposes.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
MAGE attribute ArrayGroup.barcode
Identifier for the ArrayGroup.
MAGE attribute ArrayGroup.arraySpacingX
If there exist more than one array on a slide or a chip, then the spacing between the arrays is useful so that scanning / feature extraction software can crop images representing 1 unique bioassay.
MAGE attribute ArrayGroup.arraySpacingY
If there exist more than one array on a slide or a chip, then the spacing between the arrays is useful so that scanning / feature extraction software can crop images representing 1 unique bioassay.
MAGE attribute ArrayGroup.numArrays
This attribute defines the number of arrays on a chip or a slide.
MAGE attribute ArrayGroup.orientationMark
For a human to determine where the top left side of the array is, such as a barcode or frosted side of the glass, etc.
MAGE attribute ArrayGroup.orientationMarkPosition
One of top, bottom, left or right.
MAGE attribute ArrayGroup.width
The width of the platform
MAGE attribute ArrayGroup.length
The length of the platform.
Represents 1..1 association between ArrayGroup and OntologyEntry
Commonly, arrays will be spotted on 1x3 glass microscope slides but there is nothing that says this must be the case. This association is for scanners to inform them on the possible different formats of slides that can contain arrays.
Represents 1..1 association between ArrayGroup and DistanceUnit
The unit of the measurement attributes.
Represents MAGE Class ArrayManufacture
Describes the process by which arrays are produced.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
MAGE attribute ArrayManufacture.manufacturingDate
The date the arrays were manufactured
MAGE attribute ArrayManufacture.tolerance
The allowable error of a feature printed to its intended position.
Represents MAGE Class ArrayManufactureDeviation
Stores information of the potential difference between an array design and arrays that have been manufactured using that design (e.g. a tip failed to print several spots).
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents 1..n association between Array and ArrayManufactureDeviation
Association to classes to describe deviations from the ArrayDesign.
Represents MAGE Class FeatureDefect
Stores the defect information for a feature.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents 1..n association between ArrayManufactureDeviation and FeatureDefect
Description on features who are manufactured in a different location than specified in the ArrayDesign.
Represents 1..1 association between FeatureDefect and OntologyEntry
Indicates the type of defect (e.g. a missing feature or a moved feature).
Represents 1..1 association between FeatureDefect and PositionDelta
How the feature deviates in position from the ArrayDesign.
Represents n..1 association between FeatureDefect and Feature
The feature that was manufactured defectively.
Represents MAGE Class Fiducial
A marking on the surface of the array that can be used to identify the array's origin, the coordinates of which are the fiducial's centroid.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents 1..n association between ArrayGroup and Fiducial
Association to the marks on the Array for alignment for the scanner.
Represents 1..1 association between Fiducial and OntologyEntry
A descriptive string that indicates the type of a fiducial (e.g. the chrome border on an Affymetrix array, a laser ablation mark).
Represents 1..1 association between Fiducial and DistanceUnit
The units the fiducial is measured in.
Represents 1..1 association between Fiducial and Position
The position, relative to the upper left corner, of the fiducial
Represents MAGE Class ManufactureLIMS
Information on the physical production of arrays within the laboratory.
Includes MAGE Class ManufactureLIMSBiomaterial
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Discriminator column specifies type of object this row represents
Represents 1..n association between ArrayManufacture and ManufactureLIMS
Information on the manufacture of the features.
MAGE attribute ManufactureLIMS.quality
A brief description of the quality of the array manufacture process.
Represents n..1 association between ManufactureLIMS and Feature
The feature whose LIMS information is being described.
Represents n..1 association between ManufactureLIMS and BioMaterial
The BioMaterial used for the feature.
Represents 1..1 association between ManufactureLIMS and DatabaseEntry
Association to a LIMS data source for further information on the manufacturing process.
MAGE attribute ManufactureLIMSBiomaterial.bioMaterialPlateIdentifier
The plate from which a biomaterial was obtained.
MAGE attribute ManufactureLIMSBiomaterial.bioMaterialPlateRow
The plate row from which a biomaterial was obtained. Specified by a letter.
MAGE attribute ManufactureLIMSBiomaterial.bioMaterialPlateCol
The plate column from which a biomaterial was obtained. Specified by a number.
Represents MAGE Class PositionDelta
The delta the feature was actually printed on the array from the position specified for the feature in the array design.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute PositionDelta.deltaX
Deviation from the y coordinate of this feature's position.
MAGE attribute PositionDelta.deltaY
Deviation from the y coordinate of this feature's position.
Represents 1..1 association between PositionDelta and DistanceUnit
The unit for the attributes.
Represents MAGE Class ZoneDefect
Stores the defect information for a zone.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents 1..n association between ArrayManufactureDeviation and ZoneDefect
Descriptions of how a Zone has been printed differently than specified in the ArrayDesign.
Represents 1..1 association between ZoneDefect and OntologyEntry
Indicates the type of defect (e.g. a missing zone or a moved zone).
Represents 1..1 association between ZoneDefect and PositionDelta
How the zone deviates in position from the ArrayDesign.
Represents n..1 association between ZoneDefect and Zone
Reference to the Zone that was misprinted.
Represents MAGE Class SeqFeatureLocation
The location of the SeqFeature annotation.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents 1..n association between SeqFeature and SeqFeatureLocation
Association to classes that describe the location with the sequence of the SeqFeature.
MAGE attribute SeqFeatureLocation.strandType
Indicates the direction and/or type of the SeqFeature, i.e. whether it is in the 5' or 3' direction, is double stranded, etc.
Represents 1..n association between SeqFeatureLocation and SeqFeatureLocation
Regions within the SeqFeature.
Represents 1..1 association between SeqFeatureLocation and SequencePosition
At which base pairs or amino acid this SeqFeature begins and ends.
Represents MAGE Class SequencePosition
Designates the position of the Feature in its BioSequence.
Includes MAGE Class CompositePosition
Includes MAGE Class ReporterPosition
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Discriminator column specifies type of object this row represents
MAGE attribute SequencePosition.start
The location of the base, for nucleotides, that the SeqFeature starts.
MAGE attribute SequencePosition.end
The location of the base, for nucleotides, that the SeqFeature ends.
Represents 1..n association between CompositeCompositeMap and CompositePosition
Association to the CompositeSequences that compose this CompositeSequence and where those CompositeSequences occur.
Represents n..1 association between CompositePosition and CompositeSequence
A source CompositeSequence that is part of a target CompositeSequence
Represents 1..n association between ReporterCompositeMap and ReporterPosition
Association to the reporters that compose this CompositeSequence and where those reporters occur.
Represents n..1 association between ReporterPosition and Reporter
A reporter that comprises part of a CompositeSequence.
Represents MAGE Class DesignElement
An element of an array. This is generally of type feature but can be specified as reporters or compositeSequence for arrays that are abstracted from a physical array.
Includes MAGE Class CompositeSequence
Includes MAGE Class Feature
Includes MAGE Class Reporter
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Discriminator column specifies type of object this row represents
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
Represents 1..n association between FeatureGroup and Feature
The features that belong to this group.
Represents 1..1 association between DesignElement and OntologyEntry
If the design element represents a control, the type of control it is (normalization, deletion, negative, positive, etc.)
Represents 1..1 association between Feature and Position
The position of the feature on the array, relative to the top, left corner.
Represents n..1 association between Feature and Zone
A reference to the zone this feature is in.
Represents 1..1 association between Feature and FeatureLocation
Location of this feature relative to a grid.
Represents n..1 association between Feature and FeatureGroup
The features that belong to this group.
Represents 1..1 association between Reporter and OntologyEntry
Similar to failType but indicates a warning rather than a failure.
Represents MAGE Class FeatureInformation
As part of the map information, allows the association of one or more differences in the BioMaterial on a feature from the BioMaterial of the Reporter. Useful for control purposes such as in Affymetrix probe pairs.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents n..1 association between FeatureInformation and Feature
The feature the FeatureInformation is supplying information for.
Represents 1..n association between FeatureReporterMap and FeatureInformation
Typically, the features on an array that are manufactured with this reporter's BioSequence.
Represents MAGE Class FeatureLocation
Specifies where a feature is located relative to a grid.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute FeatureLocation.row
row position in the Zone
MAGE attribute FeatureLocation.column
column position in the Zone.
Represents MAGE Class MismatchInformation
Describes how a reporter varies from its ReporterCharacteristics sequence(s) or how a Feature varies from its Reporter sequence.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents 1..n association between CompositePosition and MismatchInformation
Differences in how the contained compositeSequence matches its target compositeSequence's sequence.
Represents 1..n association between FeatureInformation and MismatchInformation
Differences in how the feature matches the reporter's sequence, typical examples is the Affymetrix probe pair where one of the features is printed with a mismatch to the other feature's perfect match.
MAGE attribute MismatchInformation.startCoord
Offset into the sequence that the mismatch occurs.
MAGE attribute MismatchInformation.newSequence
The sequence that replaces the specified sequence starting at start_coord.
MAGE attribute MismatchInformation.replacedLength
Length of the original sequence that is replaced. A deletion is specified when the length of the newSequence is less than the replacedLength.
Represents 1..n association between ReporterPosition and MismatchInformation
Differences in how the reporter matches its compositeSequence's sequence.
Represents MAGE Class Position
Specifies a position on an array.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Position.x
The horizontal distance from the upper left corner of the array.
MAGE attribute Position.y
The vertical distance from the upper left corner of the array.
Represents 1..1 association between Position and DistanceUnit
The units of the x, y positions.
Represents MAGE Class BioEvent
An abstract class to capture the concept of an event (either in the laboratory or a computational analysis).
Includes MAGE Class CompositeCompositeMap
Includes MAGE Class FeatureReporterMap
Includes MAGE Class ReporterCompositeMap
Includes MAGE Class Map
Includes MAGE Class BioAssayMap
Includes MAGE Class DesignElementMap
Includes MAGE Class QuantitationTypeMap
Includes MAGE Class Transformation
Includes MAGE Class Treatment
Includes MAGE Class BioAssayCreation
Includes MAGE Class BioAssayTreatment
Includes MAGE Class FeatureExtraction
Includes MAGE Class Hybridization
Includes MAGE Class ImageAcquisition
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Discriminator column specifies type of object this row represents
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
Represents n..1 association between CompositeCompositeMap and CompositeSequence
A map to the compositeSequences that compose this CompositeSequence.
Represents n..1 association between FeatureReporterMap and Reporter
Associates features with their reporter.
Represents n..1 association between ReporterCompositeMap and CompositeSequence
A map to the reporters that compose this CompositeSequence.
Represents n..1 association between BioAssayMap and DerivedBioAssay
The DerivedBioAssay that is produced by the sources of the BioAssayMap.
Represents n..1 association between QuantitationTypeMap and QuantitationType
The QuantitationType whose value will be produced from the values of the source QuantitationType according to the Protocol.
Represents n..1 association between Transformation and DerivedBioAssayData
The association between the DerivedBioAssayData and the Transformation event that produced it.
Represents 1..1 association between Transformation and QuantitationTypeMapping
The collection of mappings for the QuantitationTypes.
Represents 1..1 association between Transformation and DesignElementMapping
The collection of mappings for the DesignElements.
Represents 1..1 association between Transformation and BioAssayMapping
The collection of mappings for the BioAssays.
Represents 1..n association between BioMaterial and Treatment
This association is one way from BioMaterial to Treatment. From this a BioMaterial can discover the amount and type of BioMaterial that was part of the treatment that produced it.
MAGE attribute Treatment.order
The chronological order in which a treatment occurred (in relation to other treatments). More than one treatment can have the same chronological order indicating that they happened (or were caused to happen) simultaneously.
Represents 1..1 association between Treatment and OntologyEntry
The event that occurred (e.g. grow, wait, add, etc...). The actions should be a recommended vocabulary
Represents 1..1 association between Treatment and Measurement
Measures events like duration, centrifuge speed, etc.
Represents n..1 association between BioAssayCreation and Array
The array used in the BioAssayCreation event.
Represents n..1 association between BioAssayCreation and PhysicalBioAssay
The association between the BioAssayCreation event (typically Hybridization) and the PhysicalBioAssay and its annotation of this event.
Represents n..1 association between BioAssayTreatment and PhysicalBioAssay
The set of treatments undergone by this PhysicalBioAssay.
Represents n..1 association between BioAssayTreatment and PhysicalBioAssay
The PhysicalBioAssay that was treated.
Represents n..1 association between FeatureExtraction and PhysicalBioAssay
The PhysicalBioAssay used in the FeatureExtraction event.
Represents n..1 association between FeatureExtraction and MeasuredBioAssay
The association between the MeasuredBioAssay and the FeatureExtraction Event.
Represents 1..n association between PhysicalBioAssay and BioAssayTreatment
The set of treatments undergone by this PhysicalBioAssay.
Represents MAGE Class BioAssayData
Represents the dataset created when the BioAssays are created. BioAssayData is the entry point to the values. Because the actual values are represented by a different object, BioDataValues, which can be memory intensive, the annotation of the transformation can be gotten separate from the data.
Includes MAGE Class DerivedBioAssayData
Includes MAGE Class MeasuredBioAssayData
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Discriminator column specifies type of object this row represents
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
Represents n..1 association between BioAssayData and BioAssayDimension
The BioAssays of the BioAssayData.
Represents n..1 association between BioAssayData and DesignElementDimension
The DesignElements of the BioAssayData.
Represents n..1 association between BioAssayData and QuantitationTypeDimension
The QuantitationTypes of the BioAssayData.
Represents 1..1 association between BioAssayData and BioDataValues
The data values of the BioAssayData.
Represents 1..1 association between DerivedBioAssayData and Transformation
The association between the DerivedBioAssayData and the Transformation event that produced it.
Represents MAGE Class BioAssayDimension
An ordered list of bioAssays.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
Represents MAGE Class BioAssayMapping
Container of the mappings of the input BioAssay dimensions to the output BioAssay dimension.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents MAGE Class BioAssayTuple
Transformed container to specify a BioAssay and the Design Elements and their data for that BioAssay.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents n..1 association between BioAssayTuple and BioAssay
The BioAssay associated with the value of the BioAssayDatum.
Represents 1..n association between BioDataTuples and BioAssayTuple
Each BioAssayTuple contains the the Data for a BioAssay.
Represents MAGE Class BioDataValues
The actual values for the BioAssayCube.
Includes MAGE Class BioDataCube
Includes MAGE Class BioDataTuples
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Discriminator column specifies type of object this row represents
MAGE attribute BioDataCube.order
The order to expect the dimension. The enumeration uses the first letter of the three dimensions to represent the six possible orderings.
Represents 1..1 association between BioDataCube and DataInternal
Transformed class to associate white spaced delimited data to the BioAssayDataCube
Represents 1..1 association between BioDataCube and DataExternal
Transformed class to associate external data to the BioAssayDataCube
Represents MAGE Class DataExternal
Transformed class to associate external data to the BioAssayDataCube
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute DataExternal.dataFormat
The format of the external file, whitespace delimited, tab delimited, netcdf, etc...
MAGE attribute DataExternal.dataFormatInfoURI
Location for documentation on the data format
MAGE attribute DataExternal.filenameURI
The name and location of the file containing the external data
Represents MAGE Class DataInternal
Transformed class to associate whitespaced delimited data to the BioAssayDataCube
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents MAGE Class Datum
Transformed container to hold a value. QuantitationType will determine the type of this value.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Datum.value
Value for the BioAssay, DesignElement and QuantitationType specified by the parent tuple elements.
Represents MAGE Class DesignElementDimension
An ordered list of designElements. It will be realized as one of its three subclasses.
Includes MAGE Class CompositeSequenceDimension
Includes MAGE Class FeatureDimension
Includes MAGE Class ReporterDimension
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Discriminator column specifies type of object this row represents
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
Represents MAGE Class DesignElementMapping
Container of the mappings of the input DesignElement dimensions to the output DesignElement dimension.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents MAGE Class DesignElementTuple
Transformed container to specify a DesignElement and QuantitationTypes for that Element.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents 1..n association between BioAssayTuple and DesignElementTuple
DesignElement with the QuantitationTypes and their values for this BioAssay
Represents n..1 association between DesignElementTuple and DesignElement
The DesignElement associated with the value of the BioAssayDatum.
Represents MAGE Class QuantitationTypeDimension
An ordered list of quantitationTypes.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
Represents MAGE Class QuantitationTypeMapping
Container of the mappings of the input QuantitationType dimensions to the output QuantitationType dimension.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents MAGE Class QuantitationTypeTuple
Transformed container to specify a Quantitation Type and the value for that Type.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents 1..n association between DesignElementTuple and QuantitationTypeTuple
A QuantitationType and the value associated with it
Represents n..1 association between QuantitationTypeTuple and QuantitationType
The QuantitationType associated with the value of the BioAssayDatum.
Represents 1..1 association between QuantitationTypeTuple and Datum
The value to associate with the Quantitation Type.
Represents MAGE Class BioMaterialMeasurement
A BioMaterialMeasurement is a pairing of a source BioMaterial and an amount (Measurement) of that BioMaterial.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents n..1 association between BioMaterialMeasurement and BioMaterial
A source BioMaterial for a treatment.
Represents 1..1 association between BioMaterialMeasurement and Measurement
The amount of the BioMaterial.
Represents 1..n association between Treatment and BioMaterialMeasurement
The BioMaterials and the amounts used in the treatment
Represents 1..n association between BioAssayCreation and BioMaterialMeasurement
The BioSample and its amount used in the BioAssayCreation event.
Represents MAGE Class CompoundMeasurement
A CompoundMeasurement is a pairing of a source Compound and an amount (Measurement) of that Compound.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents 1..n association between Compound and CompoundMeasurement
The Compounds and their amounts used to create this Compound.
Represents n..1 association between CompoundMeasurement and Compound
A Compound to be used to create another Compound.
Represents 1..1 association between CompoundMeasurement and Measurement
The amount of the Compound.
Represents 1..n association between Treatment and CompoundMeasurement
The compounds and their amounts used in the treatment.
Represents MAGE Class BioAssay
An abstract class which represents both physical and computational groupings of arrays and biomaterials.
Includes MAGE Class DerivedBioAssay
Includes MAGE Class MeasuredBioAssay
Includes MAGE Class PhysicalBioAssay
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Discriminator column specifies type of object this row represents
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
Represents 1..1 association between DerivedBioAssay and OntologyEntry
The derivation type, for instance collapsed spot replicate, ratio, averaged intensity, bioassay replicates, etc.
Represents 1..1 association between MeasuredBioAssay and FeatureExtraction
The association between the MeasuredBioAssay and the FeatureExtraction Event.
Represents 1..1 association between PhysicalBioAssay and BioAssayCreation
The association between the BioAssayCreation event (typically Hybridization) and the PhysicalBioAssay and its annotation of this event.
Represents MAGE Class Channel
A channel represents an independent acquisition scheme for the ImageAcquisition event, typically a wavelength.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
Represents MAGE Class Image
An image is created by an imageAcquisition event, typically by scanning the hybridized array (the PhysicalBioAssay).
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
MAGE attribute Image.URI
The file location in which an image may be found.
Represents 1..1 association between Image and OntologyEntry
The file format of the image typically a TIF or a JPEG.
Represents 1..n association between PhysicalBioAssay and Image
The Images associated with this PhysicalBioAssay by ImageAcquisition.
Represents MAGE Class BioAssayDataCluster
A mathematical method of higher level analysis whereby BioAssayData are grouped together into nodes.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
Represents n..1 association between BioAssayDataCluster and BioAssayData
The BioAssayData whose values were used by the cluster algorithm.
Represents MAGE Class Node
An individual component of a clustering. May contain other nodes.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents 1..n association between BioAssayDataCluster and Node
The nodes of the cluster.
Represents 1..n association between Node and Node
Nested nodes of the BioAssayDataCluster.
Represents MAGE Class NodeContents
The contents of a node for any or all of the three Dimensions. If a node only contained genes just the DesignElementDimension would be defined.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents 1..n association between Node and NodeContents
The contents of the node, expressed as either a one, two or three dimensional object.
Represents n..1 association between NodeContents and BioAssayDimension
The relevant BioAssays for this NodeContents from the BioAssayData.
Represents n..1 association between NodeContents and DesignElementDimension
The relevant DesignElements for this NodeContents from the BioAssayData.
Represents n..1 association between NodeContents and QuantitationTypeDimension
The relevant QuantitationTypes for this NodeContents from the BioAssayData.
Represents MAGE Class NodeValue
A value associated with the Node that can rank it in relation to the other nodes produced by the clustering algorithm.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Represents 1..n association between Node and NodeValue
Values or measurements for this node that may be produced by the clustering algorithm. Typical are distance values for the nodes.
MAGE attribute NodeValue.name
The name for this value.
MAGE attribute NodeValue.value
The value for this NodeValue.
Represents 1..1 association between NodeValue and OntologyEntry
The type of value, distance, etc.
Represents 1..1 association between NodeValue and OntologyEntry
The scale (linear, log10, ln, etc.) of the value.
Represents 1..1 association between NodeValue and OntologyEntry
The data type of the any element.
Represents MAGE Class Measurement
A Measurement is a quantity with a unit.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Measurement.type
The type of measurement, for instance if the measurement is five feet, it can be either absolute (five feet tall) or change (five feet further along).
MAGE attribute Measurement.value
The value of the measurement. kindCV (and otherKind) determine with Unit the datatype of value.
MAGE attribute Measurement.kindCV
One of the enumeration values to determine the controlled vocabulary of the value.
MAGE attribute Measurement.otherKind
Name of the controlled vocabulary if it isn't one of the Unit subclasses.
Represents 1..1 association between Measurement and Unit
The Unit associated with the Measurement.
Represents MAGE Class Unit
The unit is a strict enumeration of types.
Includes MAGE Class ConcentrationUnit
Includes MAGE Class DistanceUnit
Includes MAGE Class MassUnit
Includes MAGE Class QuantityUnit
Includes MAGE Class TemperatureUnit
Includes MAGE Class TimeUnit
Includes MAGE Class VolumeUnit
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Discriminator column specifies type of object this row represents
MAGE attribute Unit.unitName
The name of the unit.
MAGE attribute ConcentrationUnit.unitNameCV
MAGE attribute DistanceUnit.unitNameCV
MAGE attribute MassUnit.unitNameCV
MAGE attribute QuantityUnit.unitNameCV
MAGE attribute TemperatureUnit.unitNameCV
MAGE attribute TimeUnit.unitNameCV
MAGE attribute VolumeUnit.unitNameCV
Represents MAGE Class Parameter
A Parameter is a replaceable value in a Parameterizable class. Examples of Parameters include: scanning wavelength, laser power, centrifuge speed, multiplicative errors, the number of input nodes to a SOM, and PCR temperatures.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
Represents 1..1 association between Parameter and Measurement
Allows the optional specification of a default values and the unit for the Parameter
Represents 1..1 association between Parameter and OntologyEntry
The type of data generated by the parameter i.e. Boolean, float, etc...
Represents 1..n association between Parameterizable and Parameter
The description of the parameters for the Parameterizable class instance.
Represents MAGE Class ParameterValue
The value of a Parameter.
Warehouse identifier for this entity
Reference to the data set from which the entity came from
MAGE attribute ParameterValue.value
The value of the parameter. Will have the datatype of its associated Parameter.
Represents n..1 association between ParameterValue and Parameter
The parameter this value is for.
Represents 1..n association between ParameterizableApplication and ParameterValue
The parameter values for this Parameterizable Application.
Represents MAGE Class Parameterizable
The Parameterizable interface encapsulates the association of Parameters with ParameterValues.
Includes MAGE Class Hardware
Includes MAGE Class Protocol
Includes MAGE Class Software
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Discriminator column specifies type of object this row represents
MAGE attribute Identifiable.identifier
An identifier is an unambiguous string that is unique within the scope (i.e. a document, a set of related documents, or a repository) of its use.
MAGE attribute Identifiable.name
The potentially ambiguous common identifier.
MAGE attribute Parameterizable.URI
Where an instantiated Parameterizable is located.
MAGE attribute Hardware.model
The model (number) of a piece of hardware.
MAGE attribute Hardware.make
The make of the Hardware (its manufacturer).
Represents 1..1 association between Hardware and OntologyEntry
The type of a piece of Hardware. Examples include: scanner, wash station...
MAGE attribute Protocol.text
The text description of the Protocol.
MAGE attribute Protocol.title
The title of the Protocol
Represents 1..1 association between Protocol and OntologyEntry
The type of a Protocol, a user should provide/use a recommended vocabulary. Examples of types include: RNA extraction, array washing, etc...
Represents 1..1 association between Software and OntologyEntry
The type of a piece of Software. Examples include: feature extractor...
Represents n..1 association between Software and Hardware
Associates Hardware and Software together.
Represents MAGE Class ParameterizableApplication
The interface that is the use of a Parameterizable class.
Includes MAGE Class HardwareApplication
Includes MAGE Class ProtocolApplication
Includes MAGE Class SoftwareApplication
Warehouse identifier for this entity
Reference to the data set from which the entity came from
Discriminator column specifies type of object this row represents
Represents 1..n association between ArrayDesign and ProtocolApplication
Describes the application of any protocols, such as the methodology used to pick oligos, in the design of the array.
Represents 1..n association between ArrayManufacture and ProtocolApplication
The protocols followed in the manufacturing of the arrays.
Represents 1..n association between BioEvent and ProtocolApplication
The applied protocols to the BioEvent.
MAGE attribute HardwareApplication.serialNumber
Manufacturer's identifier for the Hardware.
Represents n..1 association between HardwareApplication and Hardware
The underlying hardware.
MAGE attribute ProtocolApplication.activityDate
When the protocol was applied.
Represents 1..n association between ProtocolApplication and HardwareApplication
The use of hardware for the application of the protocol.
Represents 1..n association between ProtocolApplication and SoftwareApplication
The use of software for the application of the protocol.
Represents n..1 association between ProtocolApplication and Protocol
The protocol that is being used.
MAGE attribute SoftwareApplication.version
The version of the software.
MAGE attribute SoftwareApplication.releaseDate
When the software was released.
Represents n..1 association between SoftwareApplication and Software
The underlying software.
Represents n..n association between ArrayDesign and ReporterGroup
The grouping of like Reporter together. If more than one technology type occurs on the array, such as the mixing of Cloned BioMaterial and Oligos, then there would be multiple ReporterGroups to segregate the technology types.
Reference to ArrayDesign
Reference to ReporterGroup
Represents n..n association between ArrayDesign and CompositeGroup
The grouping of like CompositeSequence together. If more than one technology type occurs on the array, such as the mixing of Cloned BioMaterial and Oligos, then there would be multiple CompositeGroups to segregate the technology types.
Reference to ArrayDesign
Reference to CompositeGroup
Represents n..n association between ArrayDesign and Contact
The primary contact for information on the array design
Reference to ArrayDesign
Reference to Contact
Represents n..n association between CompositeGroup and CompositeSequence
The compositeSequences that belong to this group.
Reference to CompositeGroup
Reference to CompositeSequence
Represents n..n association between ReporterGroup and Reporter
The reporters that belong to this group.
Reference to ReporterGroup
Reference to Reporter
Represents n..n association between Experiment and Contact
The providers of the Experiment, its data and annotation.
Reference to Experiment
Reference to Contact
Represents n..n association between Experiment and BioAssayDataCluster
The results of analyzing the data, typically with a clustering algorithm.
Reference to Experiment
Reference to BioAssayDataCluster
Represents n..n association between Experiment and BioAssayData
The collection of BioAssayDatas for this Experiment.
Reference to Experiment
Reference to BioAssayData
Represents n..n association between Experiment and BioAssay
The collection of BioAssays for this Experiment.
Reference to Experiment
Reference to BioAssay
Represents n..n association between ExperimentDesign and BioAssay
The organization of the BioAssays as specified by the ExperimentDesign (TimeCourse, Dosage, etc.)
Reference to ExperimentDesign
Reference to BioAssay
Represents n..n association between QuantitationType and ConfidenceIndicator
The association between a ConfidenceIndicator and the QuantitationType its is an indicator for.
Reference to QuantitationType
Reference to ConfidenceIndicator
Represents n..n association between QuantitationType and QuantitationTypeMap
The QuantitationType whose value will be produced from the values of the source QuantitationType according to the Protocol.
Reference to QuantitationType
Reference to QuantitationTypeMap
Represents n..n association between Database and Contact
Information on the contacts for the database
Reference to Database
Reference to Contact
Represents n..n association between ArrayGroup and Array
Association between an ArrayGroup and its Arrays, typically the ArrayGroup will represent a slide and the Arrays will be the manufactured so that they may be hybridized separately on that slide.
Reference to ArrayGroup
Reference to Array
Represents n..n association between ArrayManufacture and Array
Association between the manufactured array and the information on that manufacture.
Reference to ArrayManufacture
Reference to Array
Represents n..n association between ArrayManufacture and Contact
The person or organization to contact for information concerning the ArrayManufacture.
Reference to ArrayManufacture
Reference to Contact
Represents n..n association between CompositeSequence and BioSequence
The annotation on the BioSequence this CompositeSequence represents. Typically the sequences will be a Genes, Exons, or SpliceVariants.
Reference to CompositeSequence
Reference to BioSequence
Represents n..n association between CompositeSequence and ReporterCompositeMap
A map to the reporters that compose this CompositeSequence.
Reference to CompositeSequence
Reference to ReporterCompositeMap
Represents n..n association between CompositeSequence and CompositeCompositeMap
A map to the compositeSequences that compose this CompositeSequence.
Reference to CompositeSequence
Reference to CompositeCompositeMap
Represents n..n association between Feature and Feature
Associates features with their control features.
Reference to Feature
Reference to Feature
Represents n..n association between Feature and Feature
Associates features with their control features.
Reference to Feature
Reference to Feature
Represents n..n association between Reporter and BioSequence
The sequence annotation on the BioMaterial this reporter represents. Typically the sequences will be an Oligo Sequence, Clone or PCR Primer.
Reference to Reporter
Reference to BioSequence
Represents n..n association between Reporter and FeatureReporterMap
Associates features with their reporter.
Reference to Reporter
Reference to FeatureReporterMap
Represents n..n association between BioAssayDimension and BioAssay
The BioAssays for this Dimension
Reference to BioAssayDimension
Reference to BioAssay
Represents n..n association between BioAssayMap and BioAssay
The sources of the BioAssayMap that are used to produce a target DerivedBioAssay.
Reference to BioAssayMap
Reference to BioAssay
Represents n..n association between BioAssayMapping and BioAssayMap
The maps for the BioAssays.
Reference to BioAssayMapping
Reference to BioAssayMap
Represents n..n association between CompositeSequenceDimension and CompositeSequence
The CompositeSequences for this Dimension.
Reference to CompositeSequenceDimension
Reference to CompositeSequence
Represents n..n association between DesignElementMapping and DesignElementMap
The maps for the DesignElements.
Reference to DesignElementMapping
Reference to DesignElementMap
Represents n..n association between FeatureDimension and Feature
The features for this dimension.
Reference to FeatureDimension
Reference to Feature
Represents n..n association between QuantitationTypeDimension and QuantitationType
The QuantitationTypes for this Dimension.
Reference to QuantitationTypeDimension
Reference to QuantitationType
Represents n..n association between QuantitationTypeMap and QuantitationType
The QuantitationType sources for values for the transformation.
Reference to QuantitationTypeMap
Reference to QuantitationType
Represents n..n association between QuantitationTypeMapping and QuantitationTypeMap
The maps for the QuantitationTypes.
Reference to QuantitationTypeMapping
Reference to QuantitationTypeMap
Represents n..n association between ReporterDimension and Reporter
The reporters for this dimension.
Reference to ReporterDimension
Reference to Reporter
Represents n..n association between Transformation and BioAssayData
The BioAssayData sources that the Transformation event uses to produce the target DerivedBioAssayData.
Reference to Transformation
Reference to BioAssayData
Represents n..n association between BioSource and Contact
The BioSource's source is the provider of the biological material (a cell line, strain, etc...). This could be the ATTC (American Tissue Type Collection).
Reference to BioSource
Reference to Contact
Represents n..n association between LabeledExtract and Compound
Compound used to label the extract.
Reference to LabeledExtract
Reference to Compound
Represents n..n association between BioAssay and Channel
Channels can be non-null for all subclasses. For instance, collapsing across replicate features will create a DerivedBioAssay that will potentially reference channels.
Reference to BioAssay
Reference to Channel
Represents n..n association between BioAssay and FactorValue
The values that this BioAssay is associated with for the experiment.
Reference to BioAssay
Reference to FactorValue
Represents n..n association between Channel and Compound
The compound used to label the extract.
Reference to Channel
Reference to Compound
Represents n..n association between DerivedBioAssay and DerivedBioAssayData
The data associated with the DerivedBioAssay.
Reference to DerivedBioAssay
Reference to DerivedBioAssayData
Represents n..n association between DerivedBioAssay and BioAssayMap
The DerivedBioAssay that is produced by the sources of the BioAssayMap.
Reference to DerivedBioAssay
Reference to BioAssayMap
Represents n..n association between Image and Channel
The channels captured in this image.
Reference to Image
Reference to Channel
Represents n..n association between ImageAcquisition and Image
The images produced by the ImageAcquisition event.
Reference to ImageAcquisition
Reference to Image
Represents n..n association between MeasuredBioAssay and MeasuredBioAssayData
The data associated with the MeasuredBioAssay.
Reference to MeasuredBioAssay
Reference to MeasuredBioAssayData
Represents n..n association between Hardware and Software
Associates Hardware and Software together.
Reference to Hardware
Reference to Software
Represents n..n association between Hardware and Contact
Contact for information on the Hardware.
Reference to Hardware
Reference to Contact
Represents n..n association between Protocol and Hardware
Hardware used by this protocol.
Reference to Protocol
Reference to Hardware
Represents n..n association between Protocol and Software
Software used by this Protocol.
Reference to Protocol
Reference to Software
Represents n..n association between ProtocolApplication and Person
The people who performed the protocol.
Reference to ProtocolApplication
Reference to Person
Represents n..n association between Software and Software
Software packages this software uses, i.e. operating system, 3rd party software packages, etc.
Reference to Software
Reference to Software
Represents n..n association between Software and Contact
Contact for information on the software.
Reference to Software
Reference to Contact