Table Index

Pathway


Pathways are graphs of reactions, grouped together according to a
higher biological function they perform. Some pathways may be
"template", "reference", "model" or "sum of organisms" pathways. Those
pathways do not contain an BioSourceWID reference, and have the type
field set to "R" (Reference/Model/Theoretical). For real organisms,
the type is "O".

Columns

Column MySQL Type Oracle Type Nullable Description
WID BIGINT NUMBER No Warehouse ID for this pathway
Name VARCHAR VARCHAR2(255) No Name of the pathway

Enumerated Values:
unknown - Name assigned when it is unknown or missing
Type CHAR(1) CHAR(1) No Type of pathway (see comment above)
BioSourceWID BIGINT NUMBER Yes BioSource this pathway occurs in
DataSetWID BIGINT NUMBER No WID of the dataset the pathway is from

Referenced By

Table Column
PathwayLink Pathway1WID
PathwayLink Pathway2WID
PathwayReaction PathwayWID
SuperPathway SubPathwayWID
SuperPathway SuperPathwayWID
Entry OtherWID
Support OtherWID
RelatedTerm OtherWID
CitationWIDOtherWID OtherWID
CommentTable OtherWID
CrossReference OtherWID
CrossReference CrossWID
Description OtherWID
DBID OtherWID
SynonymTable OtherWID
ToolAdvice OtherWID

Other Constraints

None.

Indexes

Name Columns
PATHWAY_BSWID_WID_DWID BioSourceWID, WID, DataSetWID
PATHWAY_TYPE_WID_DWID TYPE, WID, DataSetWID
PATHWAY_DWID DataSetWID
PATHWAY_Name Name